This function gets the average percent agent counts per replicate, if there are replicates (i.e. replicate is not NULL), then the agent percents are calculated for each replicate and these percentages are averaged.
Usage
getCountData(
agent_data,
outcome,
unit,
replicate = NULL,
type = "type",
data_append = NULL
)Arguments
- agent_data
Data.frame of agent data information, with columns as defined in subsequent parameters
- outcome
String of the column name in data indicating the outcome or response.
- unit
String of the column name in data indicating a unit or base thing. Note this unit may have replicates.
- replicate
(Optional) String of the column name in data indicating the replicate id. Default is NULL.
- type
(Optional) String of the column name in data indicating the type. Default is type.
- data_append
(Optional) Data.frame with outcome, patient that the results can be appended to if desired. Default is NULL.
Value
List with two elements:
dat: Data.frame with outcome, unit, data_append, and the count data. Columns of the count data are named after the type and are given in the next list entry.
agents: Vector of the the types, i.e. the column names for the new count data. This can be treated as meta data for funkyForest.